Can I make payments to only a few employees in a pay run?

It depends on how you’ve set up your payroll.

• If you’re using Direct Deposit for all employees, you can skip certain employees from the pay run and approve it. This way, only the selected employees will be paid. However, you cannot re-add the skipped employees or reprocess their payments for the same pay period.
• If your employees’ payment modes are set to Check, you can pay selected employees outside Zoho Payroll (e.g., by check or cash) and record their payments manually. The pay run will remain in the Pending status until all employees are paid, and you cannot process your next pay run until the current one is marked complete.